ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qkjD1 - ECOD Domain | ECOD

ECOD/Domains/e3qkjD1

e3qkjD1

UID: 000414299

PDB

Range: D:216-350
PDB: 3QKJ chain D(all domains)
UniProt: Q9UBC3 (all domains)
Gene: DNMT3B

Molecule: DNA cytosine-5 methyltransferase 3 beta isoform 6 variant

3D Structure

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Related Domains

Browse other domains in PWWP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyPWWP(4.1.1.12)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL)

Sulfate ionSO4
DrugBank DB14546
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOLBTB

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PWWP domain

ClanCL0010SH3

External Links

ECOD PDB View: 3QKJ RCSB PDB: 3QKJ PDBe: 3QKJ UniProt: Q9UBC3

Downloads

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