ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qnkC1 - ECOD Domain | ECOD

ECOD/Domains/e3qnkC1

e3qnkC1

UID: 000414303

PDB

Range: C:26-541
PDB: 3QNK chain C(all domains)
UniProt: Q5L904 (all domains)
Gene: BF9343_3647

Molecule: Putative lipoprotein

3D Structure

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Related Domains

Browse other domains in SusD family / Starch-binding associating with outer membrane →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilySusD family / Starch-binding associating with outer membrane(109.4.1.105)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, Phosphate ion)

AcetateACT
DrugBank DB14511
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF07980SusD_RagB

SusD family

ClanCL0020TPR

PF14322SusD-like_3

Starch-binding associating with outer membrane

ClanCL0020TPR

External Links

ECOD PDB View: 3QNK RCSB PDB: 3QNK PDBe: 3QNK UniProt: Q5L904

Downloads

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