ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ao2B1 - ECOD Domain | ECOD

ECOD/Domains/e3ao2B1

e3ao2B1

UID: 000414844

PDB

Range: B:57-209
PDB: 3AO2 chain B(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: POL polyprotein

3D Structure

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Related Domains

Browse other domains in rve →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

1,4-DithiothreitolDTT
drugDrugBank DB04447
3-(7-bromo-1,3-benzodioxol-5-yl)-1-methyl-1H-pyrazol-5-amineAVX
Cadmium ionCD

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 3AO2 RCSB PDB: 3AO2 PDBe: 3AO2 UniProt: P04585

Downloads

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metal

Chloride ionCL

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.