ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mzeA3 - ECOD Domain | ECOD

ECOD/Domains/e3mzeA3

e3mzeA3

UID: 000414986

PDB

Range: A:4-39,A:153-255
PDB: 3MZE chain A(all domains)
UniProt: P0AEB2 (all domains)
Gene: dacA

Molecule: D-alanyl-D-alanine carboxypeptidase dacA

3D Structure

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Related Domains

Browse other domains in Peptidase_S11 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyPeptidase_S11(223.3.1.2)

Ligands

in contact, ≤ 4 Å

(2R)-5-[(carbamoyloxy)methyl]-2-{(1S)-1-methoxy-2-oxo-1-[(thiophen-2-ylacetyl)amino]ethyl}-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid1QL
within 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF00768Peptidase_S11

D-alanyl-D-alanine carboxypeptidase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 3MZE RCSB PDB: 3MZE PDBe: 3MZE UniProt: P0AEB2

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.