ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qwuB2 - ECOD Domain | ECOD

ECOD/Domains/e3qwuB2

e3qwuB2

UID: 000415258

PDB

Range: B:3-237
PDB: 3QWU chain B(all domains)
UniProt: O67191 (all domains)
Gene: aq_1106

Molecule: DNA ligase

3D Structure

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Related Domains

Browse other domains in RNA_ligase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRNA_ligase(206.1.3.23)

Ligands

in contact, ≤ 4 Å

AdenosineADN
drugDrugBank DB00640
Calcium ionCA
metal

+ 1 additive (Glycerin)

Pfam Families

PF09414RNA_ligase

RNA ligase

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 3QWU RCSB PDB: 3QWU PDBe: 3QWU UniProt: O67191

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.