ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3aiaA1 - ECOD Domain | ECOD

ECOD/Domains/e3aiaA1

e3aiaA1

UID: 000416107

PDB

Range: A:1-200
PDB: 3AIA chain A(all domains)
UniProt: Q59034 (all domains)
Gene: trmY

Molecule: UPF0217 protein MJ1640

3D Structure

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Related Domains

Browse other domains in Methyltrn_RNA_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrn_RNA_2(2488.1.1.8)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
pentane-2,2,4,4-tetrolPBL
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04013Methyltrn_RNA_2

Putative SAM-dependent RNA methyltransferase

ClanCL0098SPOUT

External Links

ECOD PDB View: 3AIA RCSB PDB: 3AIA PDBe: 3AIA UniProt: Q59034

Downloads

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