ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2xnnA1 - ECOD Domain | ECOD

ECOD/Domains/e2xnnA1

e2xnnA1

UID: 000416410

PDB

Range: A:3-271
PDB: 2XNN chain A(all domains)
UniProt: P51955 (all domains)
Gene: NEK2

Molecule: SERINE/THREONINE-PROTEIN KINASE NEK2

3D Structure

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Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

5-(1H-benzimidazol-1-yl)-3-{(1R)-1-[2-(trifluoromethyl)phenyl]ethoxy}thiophene-2-carboxamide430
Chloride ionCL

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 2XNN RCSB PDB: 2XNN PDBe: 2XNN UniProt: P51955

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.