ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3n4cB1 - ECOD Domain | ECOD

ECOD/Domains/e3n4cB1

e3n4cB1

UID: 000416532

PDB

Range: B:1-217
PDB: 3N4C chain B(all domains)
UniProt: P25774 (all domains)
Gene: CTSS

Molecule: Cathepsin S

3D Structure

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Related Domains

Browse other domains in Peptidase_C1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C1(219.1.1.1)

Ligands

in contact, ≤ 4 Å

(E)-1-(1-methyl-6-{4-[3-(4-methylpiperazin-1-yl)propoxy]-3-(trifluoromethyl)phenyl}-1H-imidazo[4,5-c]pyridin-4-yl)methanimineEF3

+ 2 additives (Dimethyl sulfoxide, Sulfate ion)

Dimethyl sulfoxideDMS
DrugBank DB01093
Sulfate ion

Pfam Families

PF00112Peptidase_C1

Papain family cysteine protease

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 3N4C RCSB PDB: 3N4C PDBe: 3N4C UniProt: P25774

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.