ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ybkB1 - ECOD Domain | ECOD

ECOD/Domains/e2ybkB1

e2ybkB1

UID: 000416817

PDB

Range: B:7-355
PDB: 2YBK chain B(all domains)
UniProt: O75164 (all domains)
Gene: KDM4A

Molecule: LYSINE-SPECIFIC DEMETHYLASE 4A

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Ligands

in contact, ≤ 4 Å

(2R)-2-hydroxypentanedioic acid2HG
NICKEL (II) IONNI
metal
Zinc ionZN

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

ECOD PDB View: 2YBK RCSB PDB: 2YBK PDBe: 2YBK UniProt: O75164

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.