ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3pkdA1 - ECOD Domain | ECOD

ECOD/Domains/e3pkdA1

e3pkdA1

UID: 000417547

PDB

Range: A:4-285
PDB: 3PKD chain A(all domains)
UniProt: P9WK19 (all domains)
Gene: map

Molecule: Methionine aminopeptidase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_M24 →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupCreatinase/aminopeptidase-like(283)

HH-groupCreatinase/aminopeptidase(283.1)

TT-groupCreatinase/aminopeptidase(283.1.1)

FFamilyPeptidase_M24(283.1.1.1)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal
(E,2R,3R,4S,5R)-N-(2,3-dihydro-1H-inden-2-yl)-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamideY10

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00557Peptidase_M24

Metallopeptidase family M24

External Links

ECOD PDB View: 3PKD RCSB PDB: 3PKD PDBe: 3PKD UniProt: P9WK19

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure