ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3nf6B1 - ECOD Domain | ECOD

ECOD/Domains/e3nf6B1

e3nf6B1

UID: 000417873

PDB

Range: B:57-209
PDB: 3NF6 chain B(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
5-[(2-oxo-2,3-dihydro-1H-indol-1-yl)methyl]-1,3-benzodioxole-4-carboxylic acidIMV

+ 3 additives (Acetic acid, Sulfate ion, 1,2-ETHANEDIOL)

Acetic acidACY

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 3NF6 RCSB PDB: 3NF6 PDBe: 3NF6 UniProt: P12497

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03166

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.