ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ydxD1 - ECOD Domain | ECOD

ECOD/Domains/e2ydxD1

e2ydxD1

UID: 000418293

PDB

Range: D:28-334
PDB: 2YDX chain D(all domains)
UniProt: Q9NZL9 (all domains)
Gene: MAT2B

Molecule: METHIONINE ADENOSYLTRANSFERASE 2 SUBUNIT BETA

3D Structure

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Related Domains

Browse other domains in RmlD_sub_bind →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyRmlD_sub_bind(2003.1.1.52)

Ligands

in contact, ≤ 4 Å

Nicotinamide adenine dinucleotide phosphateNAP
drugDrugBank DB03461
ResveratrolSTL
drugDrugBank DB02709

Pfam Families

PF04321RmlD_sub_bind

RmlD substrate binding domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2YDX RCSB PDB: 2YDX PDBe: 2YDX UniProt: Q9NZL9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.