ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3rfaB2 - ECOD Domain | ECOD

ECOD/Domains/e3rfaB2

e3rfaB2

UID: 000419063

PDB

Range: B:78-375
PDB: 3RFA chain B(all domains)
UniProt: P36979 (all domains)
Gene: rlmN

Molecule: Ribosomal RNA large subunit methyltransferase N

3D Structure

Loading viewer...

Related Domains

Browse other domains in Radical_SAM →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM(2002.1.1.120)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3RFA RCSB PDB: 3RFA PDBe: 3RFA UniProt: P36979

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure