ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yg2B1 - ECOD Domain | ECOD

ECOD/Domains/e2yg2B1

e2yg2B1

UID: 000421127

PDB

Range: B:29-185
PDB: 2YG2 chain B(all domains)
UniProt: O95445 (all domains)
Gene: APOM

Molecule: APOLIPOPROTEIN M

3D Structure

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Related Domains

Browse other domains in ApoM →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupLipocalins(9.1)

TT-groupLipocalins(9.1.1)

FFamilyApoM(9.1.1.18)

Ligands

in contact, ≤ 4 Å

(2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphateS1P

+ 1 additive (Citrate anion)

Citrate anionFLC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

ApoM domain

ClanCL0116Calycin

External Links

ECOD PDB View: 2YG2 RCSB PDB: 2YG2 PDBe: 2YG2 UniProt: O95445

Downloads

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