ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3s6eB1 - ECOD Domain | ECOD

ECOD/Domains/e3s6eB1

e3s6eB1

UID: 000422341

PDB

Range: B:419-529
PDB: 3S6E chain B(all domains)
UniProt: Q8VH51 (all domains)
Gene: Rbm39

Molecule: RNA-binding protein 39

3D Structure

Loading viewer...

Related Domains

Browse other domains in RBM39linker →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRBM39linker(304.9.1.24)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, Glycerin)

Citric acidCIT
DrugBank DB04272
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF15519RBM39linker

linker between RRM2 and RRM3 domains in RBM39 protein

External Links

ECOD PDB View: 3S6E RCSB PDB: 3S6E PDBe: 3S6E UniProt: Q8VH51

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure