ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yigB1 - ECOD Domain | ECOD

ECOD/Domains/e2yigB1

e2yigB1

UID: 000423382

PDB

Range: B:104-269
PDB: 2YIG chain B(all domains)
UniProt: P45452 (all domains)
Gene: MMP13

Molecule: COLLAGENASE 3

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

4-(4-{[(3S)-3-HYDROXY-1-AZABICYCLO[2.2.2]OCT-3-YL]ETHYNYL}PHENOXY)-N-(PYRIDIN-4-YLMETHYL)BENZAMIDE5EL
Calcium ionCA
metal
Sodium ionNA

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 2YIG RCSB PDB: 2YIG PDBe: 2YIG UniProt: P45452

Downloads

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metal

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.