ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1nekD1 - ECOD Domain | ECOD

ECOD/Domains/e1nekD1

e1nekD1

UID: 000004240

RepresentativePDB

Range: D:3-115
PDB: 1NEK chain D(all domains)
UniProt: P0AC44 (all domains)
Gene: sdhD

Molecule: Succinate dehydrogenase hydrophobic membrane anchor protein

3D Structure

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Related Domains

Browse other domains in Sdh_cyt →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTransmembrane heme-binding four-helical bundle(5069)

HH-groupTransmembrane heme-binding four-helical bundle(5069.1)

TT-groupFumarate reductase respiratory complex transmembrane subunits(5069.1.3)

FFamilySdh_cyt(5069.1.3.1)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
Ubiquinone Q2UQ2
drugDrugBank DB08690
Cardiolipin

Pfam Families

PF01127Sdh_cyt

Succinate dehydrogenase/Fumarate reductase transmembrane subunit

ClanCL0335FumRed-TM

External Links

ECOD PDB View: 1NEK RCSB PDB: 1NEK PDBe: 1NEK UniProt: P0AC44

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.