ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3s3mA3 - ECOD Domain | ECOD

ECOD/Domains/e3s3mA3

e3s3mA3

UID: 000424184

PDB

Range: A:109-312
PDB: 3S3M chain A(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: PFV integrase

3D Structure

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Related Domains

Browse other domains in rve →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

DolutegravirDLU
drugDrugBank DB08930
Hexane-1,6-DiolHEZ
drugDrugBank DB02210

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 3S3M RCSB PDB: 3S3M PDBe: 3S3M UniProt: P14350

Downloads

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Magnesium ionMG

metal

+ 2 additives (Glycerol, Ammonium ion)

GlycerolGOL
Ammonium ionNH4

Shown in the structure viewer. Drug annotations from DrugDomain.