ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3s5wB2 - ECOD Domain | ECOD

ECOD/Domains/e3s5wB2

e3s5wB2

UID: 000424192

PDB

Range: B:9-172,B:348-429
PDB: 3S5W chain B(all domains)
UniProt: Q51548 (all domains)
Gene: pvdA

Molecule: L-ornithine 5-monooxygenase

3D Structure

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Related Domains

Browse other domains in Lys_Orn_oxgnase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyLys_Orn_oxgnase(2003.1.2.28)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
Nicotinamide adenine dinucleotide phosphateNAP
drugDrugBank DB03461

Pfam Families

PF13434Lys_Orn_oxgnase

L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3S5W RCSB PDB: 3S5W PDBe: 3S5W UniProt: Q51548

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

N~5~-hydroxy-L-ornithineONH

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.