ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ndxA1 - ECOD Domain | ECOD

ECOD/Domains/e3ndxA1

e3ndxA1

UID: 000424361

PDB

Range: A:1-99
PDB: 3NDX chain A(all domains)
UniProt: P03367 (all domains)
Gene: gag-pol

Molecule: Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

RitonavirRIT
drugDrugBank DB00503
Chloride ionCL

+ 2 additives (Dimethyl sulfoxide, Glycerin)

Dimethyl sulfoxideDMS

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3NDX RCSB PDB: 3NDX PDBe: 3NDX UniProt: P03367

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.