ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3q8yE1 - ECOD Domain | ECOD

ECOD/Domains/e3q8yE1

e3q8yE1

UID: 000424969

PDB

Range: E:1-149
PDB: 3Q8Y chain E(all domains)
UniProt: Q5HFV4 (all domains)
Gene: ndk

Molecule: Nucleoside diphosphate kinase

3D Structure

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Related Domains

Browse other domains in NDK →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Vanadate ionVO4
Magnesium ionMG

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 3Q8Y RCSB PDB: 3Q8Y PDBe: 3Q8Y UniProt: Q5HFV4

Downloads

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metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.