ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3somN1 - ECOD Domain | ECOD

ECOD/Domains/e3somN1

e3somN1

UID: 000425136

PDB

Range: N:4-235
PDB: 3SOM chain N(all domains)
UniProt: Q9Y4U1 (all domains)
Gene: MMACHC

Molecule: Methylmalonic aciduria and homocystinuria type C protein

3D Structure

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Related Domains

Browse other domains in MMACHC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFMN-dependent nitroreductase-like(304.103)

TT-groupFMN-dependent nitroreductase-like(304.103.1)

FFamilyMMACHC(304.103.1.6)

Ligands

in contact, ≤ 4 Å

CysteamineDHL
drugDrugBank DB00847
5'-DEOXYADENOSINE5AD
CobalaminB12

Pfam Families

Methylmalonic aciduria and homocystinuria type C family

ClanCL0529FMN-dep-NRtase

External Links

ECOD PDB View: 3SOM RCSB PDB: 3SOM PDBe: 3SOM UniProt: Q9Y4U1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Citrate anion)

Citrate anionFLC

Shown in the structure viewer. Drug annotations from DrugDomain.