ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2y55D2 - ECOD Domain | ECOD

ECOD/Domains/e2y55D2

e2y55D2

UID: 000425289

PDB

Range: D:45-66,D:285-353
PDB: 2Y55 chain D(all domains)
UniProt: P39045 (all domains)
Gene: dac

Molecule: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE

3D Structure

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Related Domains

Browse other domains in Peptidase_S13 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyPeptidase_S13(4019.1.1.4)

Ligands

in contact, ≤ 4 Å

Phenylacetamidomethyl boronic acidFP5

+ 1 additive (Acetone)

AcetoneACN

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02113Peptidase_S13

D-Ala-D-Ala carboxypeptidase 3 (S13) family

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 2Y55 RCSB PDB: 2Y55 PDBe: 2Y55 UniProt: P39045

Downloads

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