ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2y8sA2 - ECOD Domain | ECOD

ECOD/Domains/e2y8sA2

e2y8sA2

UID: 000425880

PDB

Range: A:281-479
PDB: 2Y8S chain A(all domains)
UniProt: B6KAM0 (all domains)
Gene: AMA1

Molecule: APICAL MEMBRANE ANTIGEN, PUTATIVE

3D Structure

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Related Domains

Browse other domains in AMA-1 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupHairpin loop containing domain-like(390)

HH-groupHairpin loop containing domain-like(390.1)

TT-groupHairpin loop containing domain-like(390.1.1)

FFamilyAMA-1(390.1.1.3)

Ligands

in contact, ≤ 4 Å

Boric acidBO3
drugDrugBank DB11326
N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 1 additive (Glycerin)

Pfam Families

Apical membrane antigen 1

ClanCL0168PAN

External Links

ECOD PDB View: 2Y8S RCSB PDB: 2Y8S PDBe: 2Y8S UniProt: B6KAM0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.