ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3t89D1 - ECOD Domain | ECOD

ECOD/Domains/e3t89D1

e3t89D1

UID: 000427873

PDB

Range: D:2-285
PDB: 3T89 chain D(all domains)
UniProt: P0ABU0 (all domains)
Gene: menB

Molecule: 1,4-Dihydroxy-2-naphthoyl-CoA synthase

3D Structure

Loading viewer...

Related Domains

Browse other domains in ECH_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupClpP/crotonase(2486)

HH-groupClpP/crotonase(2486.1)

TT-groupClpP/crotonase(2486.1.1)

FFamilyECH_1(2486.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Malonate Ion)

GlycerinGOL
DrugBank DB09462
Malonate IonMLI
DrugBank DB02201

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Enoyl-CoA hydratase/isomerase

ClanCL0127ClpP_crotonase

External Links

ECOD PDB View: 3T89 RCSB PDB: 3T89 PDBe: 3T89 UniProt: P0ABU0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure