ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yc5A1 - ECOD Domain | ECOD

ECOD/Domains/e2yc5A1

e2yc5A1

UID: 000427965

PDB

Range: A:75-299
PDB: 2YC5 chain A(all domains)
UniProt: P69834 (all domains)
Gene: ISPD

Molecule: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLOROPLASTIC

3D Structure

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Related Domains

Browse other domains in IspD →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilyIspD(7516.1.1.5)

Ligands

in contact, ≤ 4 Å

5-chloro-7-hydroxy-6-(phenylmethyl)pyrazolo[1,5-a]pyrimidine-3-carbonitrile6BC
Cadmium ionCD
metal
COPPER (II) IONCU

Pfam Families

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

ClanCL0110GT-A

External Links

ECOD PDB View: 2YC5 RCSB PDB: 2YC5 PDBe: 2YC5 UniProt: P69834

Downloads

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metal

Magnesium ionMG

metal

Sodium ionNA

metal

Zinc ionZN

metal

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.