ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3rpdB1 - ECOD Domain | ECOD

ECOD/Domains/e3rpdB1

e3rpdB1

UID: 000428160

PDB

Range: B:13-353
PDB: 3RPD chain B(all domains)
UniProt: A1RHE8 (all domains)

Molecule: Methionine synthase (B12-independent)

3D Structure

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Related Domains

Browse other domains in Meth_synt_2 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyMeth_synt_2(2002.1.1.74)

Ligands

in contact, ≤ 4 Å

SelenomethionineMSE
drugDrugBank DB11142
Zinc ionZN
metal

+ 1 additive (Glycerin)

Pfam Families

PF01717Meth_synt_2

Cobalamin-independent synthase, Catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3RPD RCSB PDB: 3RPD PDBe: 3RPD UniProt: A1RHE8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.