ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ndvB1 - ECOD Domain | ECOD

ECOD/Domains/e3ndvB1

e3ndvB1

UID: 000429723

PDB

Range: B:1-371
PDB: 3NDV chain B(all domains)
UniProt: Q52VH2 (all domains)
Gene: bapA

Molecule: Beta-peptidyl aminopeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_S58 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMocoBD/DmpA-related(231)

HH-groupMocoBD/DmpA-related(231.1)

TT-groupDmpA/ArgJ(231.1.2)

FFamilyPeptidase_S58(231.1.2.2)

Ligands

in contact, ≤ 4 Å

AmpicillinAIC
drugDrugBank DB00415

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF03576Peptidase_S58

Peptidase family S58

ClanCL0635DmpA_ArgJ

External Links

ECOD PDB View: 3NDV RCSB PDB: 3NDV PDBe: 3NDV UniProt: Q52VH2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.