ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3oxvD1 - ECOD Domain | ECOD

ECOD/Domains/e3oxvD1

e3oxvD1

UID: 000429749

PDB

Range: D:1-99
PDB: 3OXV chain D(all domains)
UniProt: P03369 (all domains)
Gene: gag-pol

Molecule: HIV-1 Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Amprenavir478
drugDrugBank DB00701

+ 3 additives (Acetate, Glycerin, Sulfate ion)

AcetateACT
DrugBank DB14511

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3OXV RCSB PDB: 3OXV PDBe: 3OXV UniProt: P03369

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.