ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3oxxD1 - ECOD Domain | ECOD

ECOD/Domains/e3oxxD1

e3oxxD1

UID: 000429758

PDB

Range: D:1-99
PDB: 3OXX chain D(all domains)
UniProt: P03369 (all domains)
Gene: gag-pol

Molecule: HIV-1 PROTEASE

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

AtazanavirDR7
drugDrugBank DB01072

+ 4 additives (Acetate, Glycerin, Phosphate ion, …)

AcetateACT
DrugBank DB14511

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3OXX RCSB PDB: 3OXX PDBe: 3OXX UniProt: P03369

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Phosphate ionPO4

DrugBank DB14523

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.