ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1yf8B1 - ECOD Domain | ECOD

ECOD/Domains/e1yf8B1

e1yf8B1

UID: 000043061

PDB

Range: B:1-133
PDB: 1YF8 chain B(all domains)
UniProt: Q6ITZ3 (all domains)

Molecule: Beta-galactoside-specific lectin 4

3D Structure

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Related Domains

Browse other domains in Ricin_B_lectin →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-Trefoil(6)

HH-groupbeta-Trefoil(6.1)

TT-groupbeta-Trefoil(6.1.1)

FFamilyRicin_B_lectin(6.1.1.4)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
beta-D-galactopyranoseGAL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00652Ricin_B_lectin

Ricin-type beta-trefoil lectin domain

ClanCL0066Trefoil

External Links

ECOD PDB View: 1YF8 RCSB PDB: 1YF8 PDBe: 1YF8 UniProt: Q6ITZ3

Downloads

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