ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yj0B1 - ECOD Domain | ECOD

ECOD/Domains/e2yj0B1

e2yj0B1

UID: 000431306

PDB

Range: B:2-68
PDB: 2YJ0 chain B(all domains)
UniProt: Q8VK10 (all domains)
Gene: MT1547

Molecule: DODECIN

3D Structure

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Related Domains

Browse other domains in Dodecin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDodecin subunit-like(872)

HH-groupFlavin-binding protein dodecin-like(872.1)

TT-groupFlavin-binding protein dodecin-like(872.1.1)

FFamilyDodecin(872.1.1.2)

Ligands

in contact, ≤ 4 Å

Coenzyme ACOA
drugDrugBank DB01992
Flavin mononucleotideFMN
drugDrugBank DB03247
N-[2-({[5-(DIMETHYLAMINO)NAPHTHALEN-1-YL]SULFONYL}AMINO)ETHYL]-2-IODOACETAMIDE

Pfam Families

PF07311Dodecin

Dodecin

ClanCL0319SHS2

External Links

ECOD PDB View: 2YJ0 RCSB PDB: 2YJ0 PDBe: 2YJ0 UniProt: Q8VK10

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chloride ionCL

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.