ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vj7A1 - ECOD Domain | ECOD

ECOD/Domains/e3vj7A1

e3vj7A1

UID: 000432460

PDB

Range: A:18-111
PDB: 3VJ7 chain A(all domains)
UniProt: P18000 (all domains)
Gene: col

Molecule: Colicin-E5

3D Structure

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Related Domains

Browse other domains in Colicin_E5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMicrobial ribonucleases-like(234)

HH-groupColicin D nuclease domain(234.3)

TT-groupColicin D nuclease domain(234.3.1)

FFamilyColicin_E5(234.3.1.2)

Ligands

in contact, ≤ 4 Å

2'-Deoxyuridine 3'-MonophosphateUM3
drugDrugBank DB03448
2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE3PD

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF12106Colicin_E5

Colicin E5 ribonuclease domain

ClanCL0640Colicin_D_E5

External Links

ECOD PDB View: 3VJ7 RCSB PDB: 3VJ7 PDBe: 3VJ7 UniProt: P18000

Downloads

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