ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3riiB1 - ECOD Domain | ECOD

ECOD/Domains/e3riiB1

e3riiB1

UID: 000432592

PDB

Range: B:7-227
PDB: 3RII chain B(all domains)
UniProt: Q9Y5K5 (all domains)
Gene: UCHL5

Molecule: Ubiquitin carboxyl-terminal hydrolase isozyme L5

3D Structure

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Related Domains

Browse other domains in Peptidase_C12 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C12(219.1.1.9)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01088Peptidase_C12

Ubiquitin carboxyl-terminal hydrolase, family 1

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 3RII RCSB PDB: 3RII PDBe: 3RII UniProt: Q9Y5K5

Downloads

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