ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3zvmB2 - ECOD Domain | ECOD

ECOD/Domains/e3zvmB2

e3zvmB2

UID: 000433584

PDB

Range: B:144-339
PDB: 3ZVM chain B(all domains)
UniProt: Q9JLV6 (all domains)
Gene: Pnkp

Molecule: BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE

3D Structure

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Related Domains

Browse other domains in PNK3P →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupHAD-like(2006.1.1)

FFamilyPNK3P(2006.1.1.12)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (Glycerin, Acetate ion)

GlycerinGOL
DrugBank DB09462
Acetate ionACT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Polynucleotide kinase 3 phosphatase

ClanCL0137HAD

External Links

ECOD PDB View: 3ZVM RCSB PDB: 3ZVM PDBe: 3ZVM UniProt: Q9JLV6

Downloads

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