ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A5IFV1_nD3 - ECOD Domain | ECOD

ECOD/Domains/A5IFV1_nD3

A5IFV1_nD3

UID: 004360396

AlphaFold

Range: 406-585
AlphaFold: AF-A5IFV1
UniProt: A5IFV1 (all domains)
Gene: ligA

Protein: DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase [NAD(+)])

3D Structure

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Related Domains

Browse other domains in HHH, DNA_ligase_ZBD, HHH_2, HHH_5 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyHHH, DNA_ligase_ZBD, HHH_2, HHH_5(102.1.1.96)

Pfam Families

Helix-hairpin-helix motif

ClanCL0198HHH

PF03119DNA_ligase_ZBD

NAD-dependent DNA ligase C4 zinc finger domain

Helix-hairpin-helix motif

ClanCL0198HHH

SAM-like Helix-hairpin-helix tandem

ClanCL0198HHH

External Links

AlphaFold DB: A5IFV1 UniProt: A5IFV1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 406-585