ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vhhD1 - ECOD Domain | ECOD

ECOD/Domains/e3vhhD1

e3vhhD1

UID: 000437244

PDB

Range: D:3-123
PDB: 3VHH chain D(all domains)
UniProt: P02701 (all domains)
Gene: AVD

Molecule: Avidin

3D Structure

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Related Domains

Browse other domains in Avidin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupAvidin/Streptavidin(9.2)

TT-groupAvidin/Streptavidin(9.2.1)

FFamilyAvidin(9.2.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
5-[(3aS,4S,6aR)-1,3-dimethyl-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acidVHH

+ 1 additive (Sulfate ion)

Pfam Families

Avidin family

External Links

ECOD PDB View: 3VHH RCSB PDB: 3VHH PDBe: 3VHH UniProt: P02701

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.