ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1gvmF1 - ECOD Domain | ECOD

ECOD/Domains/e1gvmF1

e1gvmF1

UID: 000044112

PDB

Range: F:185-318
PDB: 1GVM chain F(all domains)
UniProt: P06653 (all domains)
Gene: lytA

Molecule: AUTOLYSIN

3D Structure

Loading viewer...

Related Domains

Browse other domains in Putative cell wall binding repeat / Choline-binding repeat →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-hairpin stack(702)

HH-groupbeta-hairpin stack(702.1)

TT-groupbeta-hairpin stack(702.1.1)

FFamilyPutative cell wall binding repeat / Choline-binding repeat(702.1.1.4)

Ligands

in contact, ≤ 4 Å

CholineCHT
drugDrugBank DB00122

+ 2 additives (Capric dimethyl amine oxide, Tromethamine)

Capric dimethyl amine oxideDDQ
DrugBank DB02613

Pfam Families

PF01473Choline_bind_1

Putative cell wall binding repeat

ClanCL0694Choline_binding

PF19127Choline_bind_3

Choline-binding repeat

ClanCL0694Choline_binding

External Links

ECOD PDB View: 1GVM RCSB PDB: 1GVM PDBe: 1GVM UniProt: P06653

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

TromethamineTRS

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.