ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1gvmE1 - ECOD Domain | ECOD

ECOD/Domains/e1gvmE1

e1gvmE1

UID: 000044120

PDB

Range: E:196-318
PDB: 1GVM chain E(all domains)
UniProt: P06653 (all domains)
Gene: lytA

Molecule: AUTOLYSIN

3D Structure

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Related Domains

Browse other domains in Putative cell wall binding repeat / Choline-binding repeat →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-hairpin stack(702)

HH-groupbeta-hairpin stack(702.1)

TT-groupbeta-hairpin stack(702.1.1)

FFamilyPutative cell wall binding repeat / Choline-binding repeat(702.1.1.4)

Ligands

in contact, ≤ 4 Å

CholineCHT
drugDrugBank DB00122

+ 1 additive (Capric dimethyl amine oxide)

Capric dimethyl amine oxideDDQ
DrugBank DB02613within 5 Å only

Pfam Families

PF01473Choline_bind_1

Putative cell wall binding repeat

ClanCL0694Choline_binding

PF19127Choline_bind_3

Choline-binding repeat

ClanCL0694Choline_binding

External Links

ECOD PDB View: 1GVM RCSB PDB: 1GVM PDBe: 1GVM UniProt: P06653

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.