ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vnuD4 - ECOD Domain | ECOD

ECOD/Domains/e2vnuD4

e2vnuD4

UID: 000000449

RepresentativePDB

Range: D:495-910
PDB: 2VNU chain D(all domains)
UniProt: Q08162 (all domains)
Gene: DIS3

Molecule: EXOSOME COMPLEX EXONUCLEASE RRP44

3D Structure

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Related Domains

Browse other domains in RNB →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupRNB domain-like(2.9)

TT-groupRNB domain-like(2.9.1)

FFamilyRNB(2.9.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Sodium ionNA
metal

+ 1 additive (Pentaethylene glycol)

Pentaethylene glycol1PE

Pfam Families

RNB domain

ClanCL0021OB

External Links

ECOD PDB View: 2VNU RCSB PDB: 2VNU PDBe: 2VNU UniProt: Q08162

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.