ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1e0eB1 - ECOD Domain | ECOD

ECOD/Domains/e1e0eB1

e1e0eB1

UID: 000045168

PDB

Range: B:1-46
PDB: 1E0E chain B(all domains)
UniProt: P04584 (all domains)
Gene: gag-pol

Molecule: HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 INTEGRASE

3D Structure

Loading viewer...

Related Domains

Browse other domains in Integrase_Zn →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilyIntegrase_Zn(101.1.1.14)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02022Integrase_Zn

Integrase Zinc binding domain

ClanCL0123HTH

External Links

ECOD PDB View: 1E0E RCSB PDB: 1E0E PDBe: 1E0E UniProt: P04584

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure