ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3egvB1 - ECOD Domain | ECOD

ECOD/Domains/e3egvB1

e3egvB1

UID: 000047332

PDB

Range: B:1-69
PDB: 3EGV chain B(all domains)
UniProt: Q5SLP6 (all domains)
Gene: rplK

Molecule: 50S ribosomal protein L11

3D Structure

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Related Domains

Browse other domains in Ribosomal_L11_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L11/L12e N-terminal domain-like(3781)

HH-groupRibosomal protein L11/L12e N-terminal domain(3781.1)

TT-groupRibosomal protein L11/L12e N-terminal domain(3781.1.1)

FFamilyRibosomal_L11_N(3781.1.1.1)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
Iodide ionIOD
Chloride ionCL

Pfam Families

PF03946Ribosomal_L11_N

Ribosomal protein L11, N-terminal domain

External Links

ECOD PDB View: 3EGV RCSB PDB: 3EGV PDBe: 3EGV UniProt: Q5SLP6

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.