ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1n52B1 - ECOD Domain | ECOD

ECOD/Domains/e1n52B1

e1n52B1

UID: 000481605

PDB

Range: B:6-153
PDB: 1N52 chain B(all domains)
UniProt: P52298 (all domains)
Gene: NCBP2

Molecule: 20 kDa nuclear cap binding protein

3D Structure

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Related Domains

Browse other domains in RRM_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRRM_1(304.9.1.1)

Ligands

in contact, ≤ 4 Å

7-methyl-guanosine-5'-triphosphate-5'-guanosineGTG
drugDrugBank DB03958

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

RNA recognition motif

ClanCL0221RRM

External Links

ECOD PDB View: 1N52 RCSB PDB: 1N52 PDBe: 1N52 UniProt: P52298

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.