ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8ccmA01 - ECOD Domain | ECOD

ECOD/Domains/e8ccmA01

e8ccmA01

UID: 004837908

PDB

Range: A:-7-129,A:251-310
PDB: 8CCM chain A(all domains)

Molecule: Thioredoxin reductase

3D Structure

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Related Domains

Browse other domains in FAD_binding_2,Pyr_redox_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyFAD_binding_2,Pyr_redox_2(2003.1.2.8)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Flavin-adenine dinucleotideFAD
Magnesium ionMG
metal
~{N}6-(4-aminophenyl)-1,2-benzothiazole-3,6-diamineU9C

+ 2 additives (Glycerol, Malonate ion)

GlycerolGOL

Pfam Families

PF00890FAD_binding_2

FAD binding domain

ClanCL0063NADP_Rossmann

PF07992Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 8CCM RCSB PDB: 8CCM PDBe: 8CCM

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Malonate ionMLI

Shown in the structure viewer.