ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8pieA01 - ECOD Domain | ECOD

ECOD/Domains/e8pieA01

e8pieA01

UID: 004860930

PDB

Range: A:-14-156
PDB: 8PIE chain A(all domains)

Molecule: Nucleoside diphosphate kinase B

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNucleoside diphosphate kinases(304.34)

TT-groupNucleoside diphosphate kinases(304.34.1)

FFamilyNDK(304.34.1.1)

Ligands

in contact, ≤ 4 Å

[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate7QT

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer.

Pfam Families

Nucleoside diphosphate kinase

External Links

ECOD PDB View: 8PIE RCSB PDB: 8PIE PDBe: 8PIE

Downloads

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