ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8rt0A01 - ECOD Domain | ECOD

ECOD/Domains/e8rt0A01

e8rt0A01

UID: 004864759

PDB

Range: A:38-76,A:105-107,A:136-481
PDB: 8RT0 chain A(all domains)

Molecule: Outer capsid protein VP5

3D Structure

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Related Domains

Browse other domains in Orbi_VP5 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupOrbivirus outer capsid protein VP5(3733)

HH-groupOrbivirus outer capsid protein VP5(3733.1)

TT-groupOrbivirus outer capsid protein VP5(3733.1.1)

FFamilyOrbi_VP5(3733.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer.

Pfam Families

PF00901Orbi_VP5

Orbivirus outer capsid protein VP5

External Links

ECOD PDB View: 8RT0 RCSB PDB: 8RT0 PDBe: 8RT0

Downloads

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