ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8uk6A03 - ECOD Domain | ECOD

ECOD/Domains/e8uk6A03

e8uk6A03

UID: 004872436

PDB

Range: A:388-411,A:415-500
PDB: 8UK6 chain A(all domains)

Molecule: glutamine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1c →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1c(2005.1.1.5)

Ligands

in contact, ≤ 4 Å

(2E)-N-(pyrimidin-2-yl)-3-(thiophen-2-yl)prop-2-enamideWVK

Shown in the structure viewer.

Pfam Families

PF00749tRNA-synt_1c

tRNA synthetases class I (E and Q), catalytic domain

ClanCL0039HUP

External Links

ECOD PDB View: 8UK6 RCSB PDB: 8UK6 PDBe: 8UK6

Downloads

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