ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8vbyA01 - ECOD Domain | ECOD

ECOD/Domains/e8vbyA01

e8vbyA01

UID: 004873576

PDB

Range: A:51-208,A:235-535
PDB: 8VBY chain A(all domains)

Molecule: Sodium-dependent dopamine transporter

3D Structure

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Related Domains

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Classification

AArchitecturealpha complex topology(a.10)

XX-groupSodium:neurotransmitter symporter family (SNF)-like(5051)

HH-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1)

TT-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1.1)

FFamilySNF(5051.1.1.1)

Ligands

in contact, ≤ 4 Å

methyl (1R,2S,3S,5S)-3-(4-fluorophenyl)-8-methyl-8-azabicyclo[3.2.1]octane-2-carboxylate42L
methyl (1S,2R,3S,4R,5R)-4-{2-[(5-chlorothiophen-2-yl)ethynyl]-6-(methylamino)-9H-purin-9-yl}-2,3-dihydroxybicyclo[3.1.0]hexane-1-carboxylateA1AAF
DecaneD10
DodecaneD12
HeptaneHP6
Pentane

Pfam Families

Sodium:neurotransmitter symporter family

ClanCL0062APC

External Links

ECOD PDB View: 8VBY RCSB PDB: 8VBY PDBe: 8VBY

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

PentadecaneMYS

Sodium ionNA

metal

2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

N-octaneOCT

Cholesterol hemisuccinateY01

Zinc ionZN

metal

Shown in the structure viewer.