ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8vdkA01 - ECOD Domain | ECOD

ECOD/Domains/e8vdkA01

e8vdkA01

UID: 004873643

PDB

Range: A:1-154
PDB: 8VDK chain A(all domains)

Molecule: Serine-aspartate repeat-containing protein D

3D Structure

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Related Domains

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Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupCommon fold of diphtheria toxin/transcription factors/cytochrome f(11.1.5)

FFamilyBig_8(11.1.5.48)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 2 additives (1,2-ETHANEDIOL, Glycerol)

1,2-ETHANEDIOLEDO
GlycerolGOL

Shown in the structure viewer.

Pfam Families

Bacterial Ig domain

ClanCL0159E-set

External Links

ECOD PDB View: 8VDK RCSB PDB: 8VDK PDBe: 8VDK

Downloads

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