ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8vdkA03 - ECOD Domain | ECOD

ECOD/Domains/e8vdkA03

e8vdkA03

UID: 004873645

PDB

Range: A:320-444
PDB: 8VDK chain A(all domains)

Molecule: Serine-aspartate repeat-containing protein D

3D Structure

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Related Domains

Browse other domains in SdrD_B →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupPrealbumin-like(11.1.4)

FFamilySdrD_B(11.1.4.34)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 2 additives (1,2-ETHANEDIOL, Glycerol)

1,2-ETHANEDIOLEDO
GlycerolGOL

Shown in the structure viewer.

Pfam Families

SdrD B-like domain

ClanCL0287Transthyretin

External Links

ECOD PDB View: 8VDK RCSB PDB: 8VDK PDBe: 8VDK

Downloads

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